---
description: Compare CheckMark Payroll vs Paychex Flex regarding their features, reviews, pricing, specifications, screenshots & more.
image: https://gdm-localsites-assets-gfprod.imgix.net/images/software_advice/og_logo-55146305bbe7b450bea05c18e9be9c9a.png
title: CheckMark Payroll vs Paychex Flex Comparison
---

Breadcrumb: [Home](/) > [Payroll Software for Accountants](/directory/3179/accountant-payroll/software) > [CheckMark Payroll \<span\>vs\</span\> Paychex Flex](https://www.softwareadvice.co.uk/compare/5752/428169/checkmark/vs/paychex-flex)

# Compare CheckMark Payroll vs Paychex Flex

Canonical: https://www.softwareadvice.co.uk/compare/5752/428169/checkmark/vs/paychex-flex

> Detailed comparison between CheckMark Payroll and Paychex Flex. Check ratings, reviews, pricing, and features to make the best decision for your business.

-----

## At a Glance

| Metric | CheckMark Payroll | Paychex Flex |
| **Overall rating** | 4.0/5 | 4.2/5 |
| **Total Reviews** | 16 | 1787 |
| **Starting Price** | US$579.00 | - |
| **Free Trial** | Yes | No |
| **Free Version** | Yes | No |
| **Deployment** | Cloud, SaaS, Web-based, Mac (Desktop), Windows (Desktop), Windows (On-Premise), Linux (On-Premise) | Cloud, SaaS, Web-based, Mac (Desktop), Windows (Desktop), Android (Mobile), iPhone (Mobile), iPad (Mobile) |
| **Support** | Email/Help Desk, FAQs/Forum, Knowledge Base, Phone Support, Chat | Email/Help Desk, Phone Support, 24/7 (Live rep), Chat |
| **Training** | Live Online, Documentation, Videos | In Person, Live Online, Webinars, Documentation |

## Key features

### CheckMark Payroll

- 401(k) Tracking
- Access Controls/Permissions
- Accounting
- Accounting Integration
- Benefits Management
- Check Printing
- Compliance Management
- Direct Deposit
- Employee Management
- Employee Profiles
- For Accountants
- For Small Businesses
- Payroll Management
- Reporting & Statistics
- Split Deposits
- Tax Calculation
- Team Management
- Time Tracking
- W-2 Preparation
- Wage Garnishment

### Paychex Flex

- 401(k) Tracking
- Access Controls/Permissions
- Accounting
- Accounting Integration
- Benefits Management
- Check Printing
- Compliance Management
- Direct Deposit
- Employee Management
- Employee Profiles
- For Accountants
- For Small Businesses
- Payroll Management
- Reporting & Statistics
- Split Deposits
- Tax Calculation
- Team Management
- Time Tracking
- W-2 Preparation
- Wage Garnishment

## Links

- [View CheckMark Payroll Profile](https://www.softwareadvice.co.uk/software/5752/checkmark)
- [View Paychex Flex Profile](https://www.softwareadvice.co.uk/software/428169/paychex-flex)
- [View Original Comparison](https://www.softwareadvice.co.uk/compare/5752/428169/checkmark/vs/paychex-flex)

-----

## Structured Data

<script type="application/ld+json">
  {"@context":"https://schema.org","@graph":[{"name":"CheckMark Payroll vs Paychex Flex Comparison","description":"Compare CheckMark Payroll vs Paychex Flex regarding their features, reviews, pricing, specifications, screenshots & more.","url":"https://www.softwareadvice.co.uk/compare/5752/428169/checkmark/vs/paychex-flex","about":[{"@id":"https://www.softwareadvice.co.uk/software/5752/checkmark#software"},{"@id":"https://www.softwareadvice.co.uk/software/428169/paychex-flex#software"}],"breadcrumb":{"@id":"https://www.softwareadvice.co.uk/compare/5752/428169/checkmark/vs/paychex-flex#breadcrumblist"},"@id":"https://www.softwareadvice.co.uk/compare/5752/428169/checkmark/vs/paychex-flex#webpage","@type":["WebPage","CollectionPage"],"isPartOf":{"@id":"https://www.softwareadvice.co.uk/#website"},"inLanguage":"en-GB","publisher":{"@id":"https://www.softwareadvice.co.uk/#organization"}},{"name":"CheckMark Payroll","description":"CheckMark Payroll Software is a desktop program designed for do-it-yourself payroll processing, small businesses, accountants, and professional payroll services.\n\nThe software helps users run payroll, print checks, and pay employer taxes in a matter of minutes. Users can customize income and deductions and pay employees via ACH direct deposit or print checks directly from the program. They can also print or e-file W-2 and W-3 forms to the SSA and most states.\n\nCheckMark Payroll Software imports hours from a time clock or spreadsheet, tracks accrued sick and vacation time, emails PDF pay stubs, and prints forms such as 941, 940, 943, and 944.\n\nIt handles tax-sheltered deductions, including 401(k) contributions, and maintains federal and state withholding tables. The solution creates ACH-formatted files for direct deposit through a bank or a cloud-based deposit service for both employer and employee payments.\n\nCompatible with Mac and Windows, CheckMark Payroll Software can be used as a standalone solution or integrated with other accounting systems, such as QuickBooks and CheckMark MultiLedger Integrated Accounting Software.","image":"https://gdm-catalog-fmapi-prod.imgix.net/ProductScreenshot/71eaa97b-15b6-4bd2-8e8f-4d50edb2b1f2.png","url":"https://www.softwareadvice.co.uk/software/5752/checkmark","@id":"https://www.softwareadvice.co.uk/software/5752/checkmark#software","@type":"SoftwareApplication","publisher":{"@id":"https://www.softwareadvice.co.uk/#organization"},"applicationCategory":"BusinessApplication","aggregateRating":{"@type":"AggregateRating","ratingValue":4.0,"bestRating":5,"ratingCount":16},"offers":{"price":"579","@type":"Offer","priceCurrency":"USD"},"operatingSystem":"Cloud, Apple, Windows, Windows on premise, Linux on premise"},{"name":"Paychex Flex","description":"Paychex Flex® is an all-in-one HR platform built to help businesses hire, pay, manage, and retain employees all from a single interface. Designed to grow alongside your organization, Paychex Flex combines intelligent technology with flexible support to simplify the full scope of human resource management.\nAt the core of the platform is a connected suite of payroll, HR, benefits, and workforce management tools. Paychex Flex automates routine administrative tasks from payroll processing and tax management to benefits enrollment and scheduling. The all-in-one solution utilizes AI-enabled features such as intelligent payroll automation, predictive analytics and customizable dashboards, as well as AI-supported recruiting technology.\nEvery Paychex Flex user has complete access to in-platform tools and flexible support options at any time. The result is a platform that adapts to your organization, whether you're managing payroll for a small team or supporting a full HR function across multiple locations.","image":"https://gdm-catalog-fmapi-prod.imgix.net/ProductScreenshot/045cd983-0bb8-4a7e-a610-c0fb543c5d9f.jpeg","url":"https://www.softwareadvice.co.uk/software/428169/paychex-flex","@id":"https://www.softwareadvice.co.uk/software/428169/paychex-flex#software","@type":"SoftwareApplication","publisher":{"@id":"https://www.softwareadvice.co.uk/#organization"},"applicationCategory":"BusinessApplication","aggregateRating":{"@type":"AggregateRating","ratingValue":4.2,"bestRating":5,"ratingCount":1787},"operatingSystem":"Cloud, Apple, Windows, Android, Platform ios, Platform ipad"},{"@id":"https://www.softwareadvice.co.uk/compare/5752/428169/checkmark/vs/paychex-flex#breadcrumblist","@type":"BreadcrumbList","itemListElement":[{"name":"Home","position":1,"item":"/","@type":"ListItem"},{"name":"Payroll Software for Accountants","position":2,"item":"/directory/3179/accountant-payroll/software","@type":"ListItem"},{"name":"CheckMark Payroll vs Paychex Flex","position":3,"item":"https://www.softwareadvice.co.uk/compare/5752/428169/checkmark/vs/paychex-flex","@type":"ListItem"}]}]}
</script>
